Obs-uslab-example2.xml

USLab Coded Observation Profile Example: N gonorrhoeae PCR (id = "obs-uslab-example2")

<Observation xmlns="http://hl7.org/fhir">
  <id value="obs-uslab-example2"/>
  <!--     FHIR build is generating the narratives
<text>
    <status value="generated"/>
    <div xmlns="http://www.w3.org/1999/xhtml">
      <ul>
        <li>file: obs-uslab-example2.xml</li>
        <li> id: uslab-example2</li>
        <li> Name: USLab Observation Example2</li>
        <li>Description: USLab Coded Observation Profile Canonical Example: N gonorrhoeae
   PCR</li>
      </ul>
    </div>
  </text>
    -->
  <!--     extenstion for specimen reject goes here - not for this use case
  <extension url="http://hl7.org/fhir/StructureDefinition/uslab-specimenrejectreason">
    <valueCodeableConcept>
      <coding>
        <system value="http://hl7.org/fhir/v2/0490"/>
        <code value="EX"/>
        <display value="Expired"/>
      </coding>
    </valueCodeableConcept>
  </extension>
    -->
  <!--     extenstion for observation kind goes here     -->
  <text><status value="generated"/><div xmlns="http://www.w3.org/1999/xhtml"><p><b>Generated Narrative with Details</b></p><p><b>id</b>: obs-uslab-example2</p><p><b>identifier</b>: lab test result ID = 2345 (OFFICIAL)</p><p><b>status</b>: final</p><p><b>code</b>: Neisseria gonorrhoeae by PCR <span>(Details : {LOINC code '43305-2' = 'Neisseria gonorrhoeae rRNA [Presence] in Unspecified
           specimen by Probe and target amplification method', given as 'Neisseria gonorrhoeae rRNA
           [Presence] in Unspecified specimen by Probe and target amplification method'}; {urn:oid:2.16.840.1.1
          13883.3.72.5.24 code 'GCPCR' = '??', given as 'APTIMA GC'})</span></p><p><b>subject</b>: <a>Todd Lerr</a></p><p><b>effective</b>: 05/12/2014</p><p><b>issued</b>: 06/12/2014 3:42:15 PM</p><p><b>performer</b>: <a>Dr Leonard T Bloodraw Jr</a></p><p><b>value</b>: Positive for Neisseira gonorrheoea rRNA <span>(Details : {SNOMED CT code '10828004' = 'Positive (qualifier value)', given as 'Positive'};
           {urn:oid:2.16.840.1.113883.3.72.5.24 code 'POS' = '??', given as 'Positive'})</span></p><p><b>interpretation</b>: Abnormal <span>(Details : {http://hl7.org/fhir/v2/0078 code 'A' = 'Abnormal)</span></p><p><b>specimen</b>: <a>Urine First Void</a></p></div></text><extension url="http://hl7.org/fhir/StructureDefinition/uslab-observationkind">
    <valueCode value="result"/>
  </extension>
  <identifier>
    <use value="official"/>
    <type>
      <text value="lab test result ID"/>
    </type>
    <system value="http://lis.acmelabs.org/identifiers/labtestresult"/>
    <value value="2345"/>
  </identifier>
  <status value="final"/>
  <!--    EH :  The local and LOINC test codes go here     -->
  <code>
    <!--     EH: LOINC code goes here    -->
    <coding>
      <system value="http://loinc.org"/>
      <code value="43305-2"/>
      <display value="Neisseria gonorrhoeae rRNA [Presence] in Unspecified specimen by Probe and target amplification
       method"/>
      <!--     EH: LOCAL code goes here    -->
    </coding>
    <coding>
      <system value="urn:oid:2.16.840.1.113883.3.72.5.24"/>
      <code value="GCPCR"/>
      <display value="APTIMA GC"/>
    </coding>
    <text value="Neisseria gonorrhoeae by PCR"/>
  </code>
  <subject>
    <reference value="Patient/patient-uslab-example1"/>
    <display value="Todd Lerr"/>
  </subject>
  <effectiveDateTime value="2014-12-05"/>
  <!--     EH: Showing dateTime to ss with TZO although only needed to Day     -->
  <issued value="2014-12-06T15:42:15-08:00"/>
  <performer>
    <reference value="Practitioner/pract-uslab-example1"/>
    <display value="Dr Leonard T Bloodraw Jr"/>
  </performer>
  <!--    EH :  The local and SNOMED Result codes go here     -->
  <valueCodeableConcept>
    <coding>
      <system value="http://snomed.info/sct"/>
      <code value="10828004"/>
      <display value="Positive"/>
    </coding>
    <coding>
      <system value="urn:oid:2.16.840.1.113883.3.72.5.24"/>
      <code value="POS"/>
      <display value="Positive"/>
    </coding>
    <text value="Positive for Neisseira gonorrheoea rRNA"/>
  </valueCodeableConcept>
  <!--      eH dataabsent reason  would go here if valueQuantity was empty e.g.:
  <dataAbsentReason value="error"</dataAbsentReason>     -->
  <interpretation>
    <coding>
      <system value="http://hl7.org/fhir/v2/0078"/>
      <code value="A"/>
    </coding>
  </interpretation>
  <specimen>
    <reference value="Specimen/spec-uslab-example2"/>
    <display value="Urine First Void"/>
  </specimen>
</Observation>